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Software
Installed Software
Compilers
MPIs
See MPI.
Libraries
- AMD Core Math Library (ACML) 5.1.0 / 5.2.0 / 5.3.0 (DO NOT USE 5.3.1, ITS BROKEN) 7)
- Available with
fma4instructions, which are supported by the Mogon CPUs (recommended) - Available with multiprocessing (
mp) support
-
Applications
Mostly to be found under /cluster/Apps/, please load suitable modulefiles based on the available compiler, mpi, library-variants.
Soon available
- Ferret 6.82
Software-Wishlist
- Rosetta
- VASP
- AceMD
- Molden or any molecule visualizer
List of Compiler+Software
GCC
GCC 4.8.1 + MPI 1.6.5
| name | version | module |
|---|---|---|
| OpenFoam | 2.2.2 | software/openfoam/2.2.2 |
| PetsC | 3.3-p2 | software/petsc/3.3-p2/gcc_4.8.1_openmpi_1.6.5 |
| PetsC | 3.4.2 | software/petsc/3.4.2/gcc_4.8.1_openmpi_1.6.5 |
| PetsC | 3.4.3 | software/petsc/3.4.3/gcc_4.8.1_openmpi_1.6.5 |
| Phylobayes | - | software/phylobayes-mpi/openmpi-1.6.5/gcc-4.8.1 |
GCC 4.7.0 + MPI 1.6.1 (may not work in batch system)
| name | version | module |
|---|---|---|
| Allpaths lg | 46652 | software/bioinf/allpaths-lg/46652 |
| Blast | 2.2.28 | software/bioinf/blast/2.2.28 |
| Bowtie | - | software/bioinf/bowtie |
| Bowtie2 | - | software/bioinf/bowtie2 |
| bwa | 0.7.4 | software/bioinf/bwa/0.7.4 |
| celera | 7.0 | software/bioinf/celera/7.0 |
| cufflinks | 2.1.1 | software/bioinf/cufflinks/2.1.1 |
| fastgc | 0.10.1 | software/bioinf/fastqc/0.10.1 |
| oases | 0.28 | software/bioinf/oases/0.2.8 |
| samtools | 0.1.19 | software/bioinf/samtools/0.1.19 |
| solexaga | 2.2 | software/bioinf/solexaqa/2.2 |
| star | 2.3.0e | software/bioinf/star/2.3.0e |
| tophat | 2.0.8b | software/bioinf/tophat/2.0.8b |
| velvet | 1.2.09 | software/bioinf/velvet/1.2.09 |
| CDO | 1.5.8 | software/cdo/1.5.8 |
| HDF5 | 1.8.10 | software/hdf5/1.8.10-parallel |
| NCL | 6.1.2 | software/ncl/6.1.2 |
| NCO | 4.2.1 | software/nco/4.2.1 |
| netCDF | 4.1.3 | software/netcdf/4.1.3 |
| netCDF | 4.2-c | software/netcdf/4.2-c |
| Parallel netCDF | 1.3.1 | software/netcdf/parallel_1.3.1 |
| octave | 3.6.4 | software/octave/gcc/3.6.4 |
| orca | 2.9.1 | software/orca/2.9.1 |
| Paraview | 3.14.1 | software/paraview/3.14.1 |
| udunits | 2.1.24 | software/udunits/gcc/2.1.24 |
Intel
Intel Studio 2011 SP1 10 (incl. intelmpi)
| name | version | module |
|---|---|---|
| udunits | 2.1.24 | software/udunits/intel/2.1.24 |
1)
From the SL base system, no modulefile needed
2)
Modulefiles
gcc/*3)
Modulefile
intel/composer/2011_sp1.10.319 or intel-studio-2011-sp1-104)
Modulefile
intel/composer/2013_4_183 or intel-cluster-studio-2013.0.0285)
Modulefiles
open64/*6)
Modulefiles
pgi/*7)
Modulefiles
acml/*/<compiler>{,_fma4}{,_mp}8)
Modulefile
intel/mkl/2011_sp1.10.319 or intel-studio-2011-sp1-109)
Modulefile
intel/mkl/2013_4_183 or intel-cluster-studio-2013.0.028