pyRAD
| pyRAD | |
|---|---|
| Website: | http://dereneaton.com/software/pyrad/ |
| Version: | 3.0.3 |
| Modulefile: | software/bioinf/pyRAD/3.0.3 |
| Prerequisites: | Python/2.7.7, software/bioinf/vsearch / software/bioinf/usearch, software/bioinf/muscle, ( software/bioinf/PEAR) |
Notes
You don't really need to load the modulefiles for the other bioinf packages if you specify the full path to them in lines 4 and 5 in params.txt:
- params.txt
[...] /cluster/Apps/bioinf/vsearch/1.1.1/vsearch ## 4. command (or path) to call vsearch (or usearch) (s3,s6) /cluster/Apps/bioinf/muscle/3.8.31_i86/muscle ## 5. command (or path) to call muscle (s3,s7) [...]