software:topical:lifescience:bbmap

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software:topical:lifescience:bbmap [2018/09/09 16:53]
meesters created
software:topical:lifescience:bbmap [2018/09/09 16:58]
meesters [A word of caution]
Line 22: Line 22:
 </​code>​ </​code>​
 will add those to the path. will add those to the path.
 +
 +===== Two Words of Caution =====
 +
 +
 +<WRAP center round alert 90%>
 +  - The BBMap project is entirely written in Java. This does not necessarily play well with batch system. Please have a look on our [[:​java|hints to Java]] or approach us and report specific issues((Issues with regard to the application itself should be reported to the developer)). ​
 +  - Mapping software can cause I/O contention. We can check your jobscript, if in doubt.
 +</​WRAP>​
 +
 +
 +
 +===== No Wrappers in Place =====
  
 <WRAP center round todo 90%> <WRAP center round todo 90%>
 There are no wrapper scripts in place. So, when launching them concurrently please be sure to avoid I/O contention (e.g. stage-in data to a local disk or ramdisk). You can approach us, if you want to integrate any of those tools into your workflow. There are no wrapper scripts in place. So, when launching them concurrently please be sure to avoid I/O contention (e.g. stage-in data to a local disk or ramdisk). You can approach us, if you want to integrate any of those tools into your workflow.
 </​WRAP>​ </​WRAP>​
 +
 +
  
  • software/topical/lifescience/bbmap.txt
  • Last modified: 2018/09/09 16:58
  • by meesters