software:topical:lifescience:local_search_tools

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software:topical:lifescience:local_search_tools [2019/03/12 09:10]
meesters created
software:topical:lifescience:local_search_tools [2019/03/13 14:04] (current)
meesters [Individual Search Tools]
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 === BLAST+ === === BLAST+ ===
 +
 +[[https://​blast.ncbi.nlm.nih.gov/​Blast.cgi|BLAST+]] from the NCBI (National Center for Biotechnology Information) is the "​canonical"​ implementation of a local alignment search tool, well established and maintained.
  
 We provide this software as [[:​setting_up_environment_modules|modules]] under: We provide this software as [[:​setting_up_environment_modules|modules]] under:
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 === BLAT === === BLAT ===
 +
 +[[http://​genome.ucsc.edu/​FAQ/​FAQblat|BLAT]] is a alternative implementation and long time competitor of BLAST+. Particularly,​ it strives to be faster than BLAST+. ​
  
 We provide this software as [[:​setting_up_environment_modules|modules]] under: We provide this software as [[:​setting_up_environment_modules|modules]] under:
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 === Diamond === === Diamond ===
 +
 +[[http://​www.diamondsearch.org/​index.php|Diamond]] is yet another implementation,​ restricted to protein sequences it is considerably faster the ''​blastp''​.
  
 We provide this software as [[:​setting_up_environment_modules|modules]] under: We provide this software as [[:​setting_up_environment_modules|modules]] under:
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 === Lambda === === Lambda ===
  
-Soon.+[[https://​github.com/​seqan/​lambda|Lambda]] claims to operate faster and in a compatible fashion compared to ''​blastn/​p/​x''​ 
 + 
 +We provide this software as [[:​setting_up_environment_modules|modules]] under: 
 + 
 +''​bio/​lambda''​ -- the application is ''​lambda2''​
  
 ===== The Wrapper Module on Mogon ===== ===== The Wrapper Module on Mogon =====
  • software/topical/lifescience/local_search_tools.txt
  • Last modified: 2019/03/13 14:04
  • by meesters