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software:topical:lifescience:ngs_read_mapping_tools

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software:topical:lifescience:ngs_read_mapping_tools [2019/08/05 09:29]
meesters fix: broken link
software:topical:lifescience:ngs_read_mapping_tools [2019/08/05 09:29] (current)
meesters fix: broken link
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 About Arguments: About Arguments:
   * ''​referencedir''​ needs to be the (relative) path to a directory containing an indexed BWA reference. No symbolic links are allowed.   * ''​referencedir''​ needs to be the (relative) path to a directory containing an indexed BWA reference. No symbolic links are allowed.
-  * ''​inputdir''​ needs to be a (relative) path to a directory containing all inputs. Subdirectories and files containing the string ''​unpaired''​ are ignored; this is to support preprocessing with the [[software:​topical:​lifescience:​trimmomatic|trimmomatic ​module]].+  * ''​inputdir''​ needs to be a (relative) path to a directory containing all inputs. Subdirectories and files containing the string ''​unpaired''​ are ignored; this is to support preprocessing with the [[software:​topical:​lifescience:​qc|quality check module]].
  
  
software/topical/lifescience/ngs_read_mapping_tools.txt · Last modified: 2019/08/05 09:29 by meesters