software:topical:lifescience:ngs_read_mapping_tools
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software:topical:lifescience:ngs_read_mapping_tools [2019/08/05 09:29] meesters fix: broken link |
software:topical:lifescience:ngs_read_mapping_tools [2019/08/05 09:29] (current) meesters fix: broken link |
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| About Arguments: | About Arguments: | ||
| * ''referencedir'' needs to be the (relative) path to a directory containing an indexed BWA reference. No symbolic links are allowed. | * ''referencedir'' needs to be the (relative) path to a directory containing an indexed BWA reference. No symbolic links are allowed. | ||
| - | * ''inputdir'' needs to be a (relative) path to a directory containing all inputs. Subdirectories and files containing the string ''unpaired'' are ignored; this is to support preprocessing with the [[software:topical:lifescience:trimmomatic|trimmomatic module]]. | + | * ''inputdir'' needs to be a (relative) path to a directory containing all inputs. Subdirectories and files containing the string ''unpaired'' are ignored; this is to support preprocessing with the [[software:topical:lifescience:qc|quality check module]]. |
software/topical/lifescience/ngs_read_mapping_tools.txt · Last modified: 2019/08/05 09:29 by meesters
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