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software:topical:lifescience:phylogenic_reconstruction

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Phylogenetic Reconstruction

Software Tools

FastTree

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It is available as a module:

bio/FastTree

IQ-Tree

http://www.iqtree.org/ Self-claimed “Efficient software for phylogenomic inference”. It is available as a module:

bio/IQ-TREE

MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters. It is available as a module:

bio/MrBayes

PhyloBayes

PhyloBayes is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments. It is available as a module:

bio/PhyloBayes-MPI

RAxML

RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. It is available as a module:

bio/RAxML

software/topical/lifescience/phylogenic_reconstruction.1576499620.txt.gz · Last modified: 2019/12/16 13:33 by meesters