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software:topical:lifescience:sdi [2019/02/11 17:11]
meesters [The Wrapper Module on Mogon]
software:topical:lifescience:sdi [2019/02/13 12:28] (current)
meesters [The Wrapper Module on Mogon]
Line 98: Line 98:
 The output naming scheme: The output naming scheme:
-Within the specified (or default) output directory, ​+Within the specified (or default) output directory, ​the resulting BAM (and index) files will be stored with names according to this scheme: 
 +  * ''​_sorted_index.bai''​ - ending for index files 
 +  * ''​_sorted_dedup.bam''​ - for sorted and deduplicated files 
 +  * ''​_sorted.bam'' ​      - if only sorted and not deduplicated 
 +Note the different application work with different default compression ratios. Hence, the output size may differ for identical data - if anyone cares to compare the different tools.
  • software/topical/lifescience/sdi.txt
  • Last modified: 2019/02/13 12:28
  • by meesters