software:topical:lifescience:transcript_abundance_tools

Assesing Transscript Abundance

Software Options

kallisto quantifies abundances of transcripts from RNA-Seq data, or more other target sequences using high-throughput sequencing reads. Modules on Mogon can be found as1):

bio/kallisto

sleuth investigates RNA-Seq transcript abundance from kallisto and perform differential expression analysis. Modules on Mogon can be found as:

bio/sleuth


1)
loading a module without version specification will load the most recent one
  • software/topical/lifescience/transcript_abundance_tools.txt
  • Last modified: 2019/11/08 12:41
  • by meesters