software:topical:lifescience:transcript_abundance_tools

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software:topical:lifescience:transcript_abundance_tools [2019/11/08 12:41]
meesters [sleuth]
— (current)
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-====== Assesing Transscript Abundance ====== 
  
-====== Software Options ====== 
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-===== kallisto ===== 
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-[[http://pachterlab.github.io/kallisto/|kallisto]] quantifies abundances of transcripts from RNA-Seq data, or more other target sequences using high-throughput sequencing reads. Modules on Mogon can be found as((loading a module without version specification will load the most recent one)): 
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-''bio/kallisto'' 
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-===== sleuth ===== 
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-[[http://pachterlab.github.io/sleuth|sleuth]] investigates RNA-Seq transcript abundance from kallisto and perform differential expression analysis. Modules on Mogon can be found as: 
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-''bio/sleuth'' 
  • software/topical/lifescience/transcript_abundance_tools.1573213274.txt.gz
  • Last modified: 2019/11/08 12:41
  • by meesters