software:topical:lifescience

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software:topical:lifescience [2019/11/08 12:06]
meesters [Various -- Software Collections]
software:topical:lifescience [2019/12/16 12:23]
meesters
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 If an installed tool is not listed on this page, respectively its underlying links, you may contribute this (its a wiki!) or ask for further documentation. If an installed tool is not listed on this page, respectively its underlying links, you may contribute this (its a wiki!) or ask for further documentation.
 </WRAP> </WRAP>
 +
 +===== R and Bioconductor =====
 +
 +The information on R and Bioconductor merits a [[software:topical:lifescience:R_Bioconductor|separate page]].
  
 ===== NGS & Co. ===== ===== NGS & Co. =====
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   * [[software:topical:lifescience:ngs_read_mapping_tools|NGS Read-Mapping Tools]]   * [[software:topical:lifescience:ngs_read_mapping_tools|NGS Read-Mapping Tools]]
  
 +==== Variant Calling Tools ====
 +
 +  * [[software:topical:lifescience:variant_calling_tools|Variant Calling Tools]]
 ==== Intermediate Processing ==== ==== Intermediate Processing ====
  
   * [[software:topical:lifescience:sdi|Sorting, Deduplication and Indexing of BAM files]]   * [[software:topical:lifescience:sdi|Sorting, Deduplication and Indexing of BAM files]]
 +
 +==== *-Seq Analysis ====
 +
 +  * [[software:topical:lifescience:transcript_abundance_tools|Assessing Transcript Abundance]]
  
 ==== Annotation Tools / Local Search Tools ==== ==== Annotation Tools / Local Search Tools ====
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   * [[software:topical:lifescience:bbmap|BBMap]] -- short read aligner + other tools    * [[software:topical:lifescience:bbmap|BBMap]] -- short read aligner + other tools 
  
-===== Genome Assembly ===== 
- 
-  * [[software:topical:lifescience:genome_assembly|Genome Assembly Tools]] 
  
 ===== Evolutionary & Phylogenetics Software Tools ===== ===== Evolutionary & Phylogenetics Software Tools =====
  
 +  * [[software:topical:lifescience:genome_assembly|Genome Assembly Tools]]
 +  * [[software:topical:lifescience:phylogenic_reconstruction|Phylogenetic Reconstruction]]
 +  * [[software:topical:lifescience:multiple_sequence_alignment|Multiple Sequence Alignment]]
 +  * [[software:topical:lifescience:population_genetics|General Population Genetics]]
  
-  * [[software:topical:lifescience:ipyrad|IPyrad]] 
  
 ===== Molecular Docking Tools ===== ===== Molecular Docking Tools =====