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software:topical:lifescience [2019/07/30 12:33]
meesters
software:topical:lifescience [2019/12/16 12:23] (current)
meesters
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 If an installed tool is not listed on this page, respectively its underlying links, you may contribute this (its a wiki!) or ask for further documentation. If an installed tool is not listed on this page, respectively its underlying links, you may contribute this (its a wiki!) or ask for further documentation.
 </​WRAP>​ </​WRAP>​
 +
 +===== R and Bioconductor =====
 +
 +The information on R and Bioconductor merits a [[software:​topical:​lifescience:​R_Bioconductor|separate page]].
  
 ===== NGS & Co. ===== ===== NGS & Co. =====
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   * [[software:​topical:​lifescience:​ngs_read_mapping_tools|NGS Read-Mapping Tools]]   * [[software:​topical:​lifescience:​ngs_read_mapping_tools|NGS Read-Mapping Tools]]
  
 +==== Variant Calling Tools ====
 +
 +  * [[software:​topical:​lifescience:​variant_calling_tools|Variant Calling Tools]]
 ==== Intermediate Processing ==== ==== Intermediate Processing ====
  
   * [[software:​topical:​lifescience:​sdi|Sorting,​ Deduplication and Indexing of BAM files]]   * [[software:​topical:​lifescience:​sdi|Sorting,​ Deduplication and Indexing of BAM files]]
 +
 +==== *-Seq Analysis ====
 +
 +  * [[software:​topical:​lifescience:​transcript_abundance_tools|Assessing Transcript Abundance]]
  
 ==== Annotation Tools / Local Search Tools ==== ==== Annotation Tools / Local Search Tools ====
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 ==== Various -- Software Collections ==== ==== Various -- Software Collections ====
  
-  * [[software:​topical:​lifescience:​seqan|SeqAn]] -- efficient applications of different areas * +  * [[software:​topical:​lifescience:​seqan|SeqAn]] -- efficient applications of different areas  
-  * [[software:​topical:​lifescience:​bbmap|BBMap]] -- short read aligner + other tools *+  * [[software:​topical:​lifescience:​bbmap|BBMap]] -- short read aligner + other tools 
  
-===== Genome Assembly ===== 
- 
-  * [[software:​topical:​lifescience:​genome_assembly|Genome Assembly Tools]] 
  
 ===== Evolutionary & Phylogenetics Software Tools ===== ===== Evolutionary & Phylogenetics Software Tools =====
  
 +  * [[software:​topical:​lifescience:​genome_assembly|Genome Assembly Tools]]
 +  * [[software:​topical:​lifescience:​phylogenic_reconstruction|Phylogenetic Reconstruction]]
 +  * [[software:​topical:​lifescience:​multiple_sequence_alignment|Multiple Sequence Alignment]]
 +  * [[software:​topical:​lifescience:​population_genetics|General Population Genetics]]
  
-  * [[software:​topical:​lifescience:​ipyrad|IPyrad]] 
  
 ===== Molecular Docking Tools ===== ===== Molecular Docking Tools =====
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   * [[software:​topical:​physics:​vmd_namd|Using VMD and NAMD on Mogon]]   * [[software:​topical:​physics:​vmd_namd|Using VMD and NAMD on Mogon]]
 +
 +===== Single Particle Processing / Analysis =====
 +
 +  * [[software:​topical:​lifescience:​cistem|Using cisTEM]]
 +  * [[software:​topical:​lifescience:​relion|Using RELION]]
  
 ===== Development ===== ===== Development =====
software/topical/lifescience.1564482800.txt.gz · Last modified: 2019/07/30 12:33 by meesters