This is an old revision of the document!
This page is currently under construction. It will hardly ever display a comprehensive/complete list:
Links which are displayed in red, do not exist, yet. Any contribution or suggestion is welcome.
A note on limitations:
News on software in bioinformatics and related stuff is distributed via a mailing list (low traffic). You can subscribe, too. You may also distribute and share information using this list.
Yes, please! Please get in touch with us, if you want to benchmark or contribute wrapper scripts. We created some repositories and would be delighted to you to the list of contributors. Also, contributions to this wiki (reports, suggestions, error notes) are welcome!
To list the available tools, you can type:
module av bio/ |& cut -f2 -d '/' | uniq
module av|& grep <tool of interest>
tool of interest is copy-pasted from the output above, will show the respective versions for that software.
You can ask for updates on a particular software or to install previously not supported software via our webpage.
If an installed tool is not listed on this page, respectively its underlying links, you may contribute this (its a wiki!) or ask for further documentation.
The information on R and Bioconductor merits a separate page.
Molecular Dynamics (MD) simulations are not confined to condensed matter physics, but of interest in the life sciences as well. They are, however, thematically attributed to physics. This page, therefore, merely indicates a link:
This wiki does not cover your topic / favorite software? Please let us know.
Any contribution (a script, an idea, a reported issue, feature request, documentation, test data, own benchmark, etc.) is welcome! Particularly, section links labeled with “*” require attention4).
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