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software:topical:r_bioconductor [2019/11/15 09:46]
meesters
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-====== R and Bioconductor ====== 
  
-The HPC group supports Bioconductor by providing it in modules: 
- 
-''​bio/​R-bundle-Bioconductor''​ 
- 
-Please consider the [[development:​scripting_languages:​r|general notes on R]]. 
- 
-===== Installed Libraries ===== 
- 
-The number of installed libraries will vary over time. To see the installed Bioconductor libraries of a particular module, start up R and inquire with: 
- 
-<code R> 
-library(sessioninfo) 
-library(dplyr) 
- 
-# list all installed packages 
-pkgs <- installed.packages()[,'​Package'​] 
- 
-## combine and filter for BioC only 
-bioc_pkgs <- tibble(pkgs,​ source) %>% filter(source == "​Bioconductor"​) 
-options(tibble.print_max = Inf) 
-bioc_pkgs 
-</​code>​ 
software/topical/r_bioconductor.1573807579.txt.gz · Last modified: 2019/11/15 09:46 by meesters