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software:topical:r_bioconductor

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R and Bioconductor

The HPC group supports Bioconductor by providing it in modules:

bio/R-bundle-Bioconductor

Please consider the general notes on R.

Installed Libraries

The number of installed libraries will vary over time. To see the installed Bioconductor libraries of a particular module, start up R and inquire with:

library(sessioninfo)
library(dplyr)
 
# list all installed packages
pkgs <- installed.packages()[,'Package']
 
## combine and filter for BioC only
bioc_pkgs <- tibble(pkgs, source) %>% filter(source == "Bioconductor")
options(tibble.print_max = Inf)
bioc_pkgs
software/topical/r_bioconductor.1573807635.txt.gz · Last modified: 2019/11/15 09:47 by meesters