software:topical:r_bioconductor

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software:topical:r_bioconductor [2019/11/15 09:47]
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-====== R and Bioconductor ====== 
  
-The HPC group supports Bioconductor by providing it in modules: 
- 
-''bio/R-bundle-Bioconductor'' 
- 
-Please consider the [[development:scripting_languages:r|general notes on R]]. 
- 
-===== Installed Libraries ===== 
- 
-The number of installed libraries will vary over time. To see the installed Bioconductor libraries of a particular module, start up R and inquire with: 
- 
-<code Rsplus> 
-library(sessioninfo) 
-library(dplyr) 
- 
-# list all installed packages 
-pkgs <- installed.packages()[,'Package'] 
- 
-## combine and filter for BioC only 
-bioc_pkgs <- tibble(pkgs, source) %>% filter(source == "Bioconductor") 
-options(tibble.print_max = Inf) 
-bioc_pkgs 
-</code> 
  • software/topical/r_bioconductor.1573807635.txt.gz
  • Last modified: 2019/11/15 09:47
  • by meesters