software

This is an old revision of the document!


Software

  • GCC 4.4.6 1) / 4.6.2 / 4.7.0 2)
  • Intel Composer 2011 SP1 3)
  • Open64 4.5.1 / 4.5.2 4)
  • PGI 12.4 5)

See MPI.

Mostly to be found under /cluster/Apps/, please load suitable modulefiles based on the available compiler, mpi, library-variants.

  • Ferret 6.82
  • netCDF 4.2-C++
  • BLAST+
  • Rosetta
  • VASP
  • AceMD
  • Molden or any molecule visualizer

GCC 4.8.1 + MPI 1.6.5

name version module
OpenFoam 2.2.2 software/openfoam/2.2.2

GCC 4.7.0 + MPI 1.6.1 (may not work in batch system)

name version module
Allpaths lg 46652 software/bioinf/allpaths-lg/46652
Blast 2.2.28 software/bioinf/blast/2.2.28
Bowtie - software/bioinf/bowtie
Bowtie2 - software/bioinf/bowtie2
bwa 0.7.4 software/bioinf/bwa/0.7.4
celera 7.0 software/bioinf/celera/7.0
cufflinks 2.1.1 software/bioinf/cufflinks/2.1.1
fastgc 0.10.1 software/bioinf/fastqc/0.10.1
oases 0.28 software/bioinf/oases/0.2.8
samtools 0.1.19 software/bioinf/samtools/0.1.19
solexaga 2.2 software/bioinf/solexaqa/2.2
star 2.3.0e software/bioinf/star/2.3.0e
tophat 2.0.8b software/bioinf/tophat/2.0.8b
velvet 1.2.09 software/bioinf/velvet/1.2.09
CDO 1.5.8 software/cdo/1.5.8
HDF5 1.8.10 software/hdf5/1.8.10-parallel
NCL 6.1.2 software/ncl/6.1.2
NCO 4.2.1 software/nco/4.2.1
netCDF 4.1.3 software/netcdf/4.1.3
netCDF 4.2-c software/netcdf/4.2-c
Parallel netCDF 1.3.1 software/netcdf/parallel_1.3.1
octave 3.6.4 software/octave/gcc/3.6.4
orca 2.9.1 software/orca/2.9.1
Paraview 3.14.1 software/paraview/3.14.1
udunits 2.1.24 software/udunits/gcc/2.1.24

1)
From the SL base system, no modulefile needed
2)
Modulefiles gcc/*
3)
Modulefile intel/composer/2011_sp1.10.319 or intel-studio-2011-sp1-10
4)
Modulefiles open64/*
5)
Modulefiles pgi/*
6)
Modulefiles acml/*/<compiler>{,_fma4}{,_mp}
7)
Modulefile intel/mkl/2011_sp1.10.319 or intel-studio-2011-sp1-10
  • software.1383915932.txt.gz
  • Last modified: 2013/11/08 14:05
  • by vormstep