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software [2014/03/27 11:56]
ulges [Compilers]
— (current)
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-====== Software ====== 
  
-===== Installed Software ===== 
- 
-==== Compilers ==== 
- 
-  * GCC 4.4.6 ((From the SL base system, no modulefile needed)) / 4.6.2 / 4.7.0 / 4.8.2 ((Modulefiles ''gcc/*'')) 
-  * Intel Composer 2011 SP1 ((Modulefile ''intel/composer/2011_sp1.10.319'' or ''intel-studio-2011-sp1-10'')) / Intel Composer 2013 ((Modulefile ''intel/composer/2013_4_183'' or ''intel-cluster-studio-2013.0.028'')) 
-  * Open64 4.5.1 / 4.5.2 ((Modulefiles ''open64/*'')) 
-  * PGI 12.4 / 13.10 / 14.1 ((Modulefiles ''pgi/*'')) 
- 
-==== MPIs ==== 
- 
-See [[mpi|MPI]]. 
- 
-==== Libraries ==== 
- 
-  * [[software:acml|AMD Core Math Library]] (ACML) 5.1.0 / 5.2.0 / 5.3.0 (DO NOT USE 5.3.1, ITS BROKEN) ((Modulefiles ''acml/*/<compiler>{,_fma4}{,_mp}'')) 
-    * Available with ''fma4'' instructions, which are supported by the Mogon CPUs (recommended) 
-    * Available with multiprocessing (''mp'') support 
-  * [[software:mkl|Intel Math Kernel Library]] (MKL) 2011 SP1 ((Modulefile ''intel/mkl/2011_sp1.10.319'' or ''intel-studio-2011-sp1-10'')) 
-    * [[http://software.intel.com/sites/products/mkl/|Math Kernel Library Link Line Advisor]] 
- 
-==== Applications ==== 
- 
-Mostly to be found under ''/cluster/Apps/'', please load suitable modulefiles based on the available compiler, mpi, library-variants. 
- 
-  * [[software:CDO|CDO (Climate Data Operators)]] 
-  * [[software:cp2k|CP2K]] 
-  * [[software:gromacs|Gromacs]] 
-  * [[software:hdf5|HDF5 parallel version]] 
-  * [[software:namd2|NAMD2]] 
-  * [[software:nco|NCO (netCDF Operator)]] 
-  * [[software:netcdf|netCDF]] | [[software:pnetcdf|PnetCDF]] 
-  * [[software:openfoam|OpenFOAM]] 
-  * [[software:petsc|PETSc]] 
-  * [[software:UDUNITS]] 
-  * [[software:Darshan]] 
-  * Matlab 
-  * [[software:Mathematica]] 
-  * [[software:Nwchem]] 
-===== Soon available ===== 
- 
-  * Ferret 6.82 
-  * netCDF 4.2-C++ 
-  * BLAST+ 
-===== Software-Wishlist ===== 
- 
-  * Rosetta 
-  * VASP 
-  * AceMD 
-  * Molden or any molecule visualizer 
- 
-===== List of Compiler+Software ===== 
- 
-==== GCC ==== 
- 
-=== GCC 4.8.1 + MPI 1.6.5 === 
- 
-^ name ^ version ^ module ^ 
-| OpenFoam | 2.2.2 | software/openfoam/2.2.2 | 
-| PetsC | 3.3-p2 | software/petsc/3.3-p2/gcc_4.8.1_openmpi_1.6.5 | 
-| PetsC | 3.4.2 | software/petsc/3.4.2/gcc_4.8.1_openmpi_1.6.5 | 
-| PetsC | 3.4.3 | software/petsc/3.4.3/gcc_4.8.1_openmpi_1.6.5 | 
-| Phylobayes | - | software/phylobayes-mpi/openmpi-1.6.5/gcc-4.8.1 | 
- 
-=== GCC 4.7.0 + MPI 1.6.1 (may not work in batch system) === 
- 
-^ name ^ version ^ module ^ 
-| Allpaths lg | 46652 | software/bioinf/allpaths-lg/46652 | 
-| Blast | 2.2.28 | software/bioinf/blast/2.2.28 | 
-| Bowtie | - | software/bioinf/bowtie | 
-| Bowtie2 | - |software/bioinf/bowtie2 | 
-| bwa | 0.7.4 | software/bioinf/bwa/0.7.4 | 
-| celera | 7.0 | software/bioinf/celera/7.0 | 
-| cufflinks | 2.1.1 | software/bioinf/cufflinks/2.1.1 | 
-| fastgc | 0.10.1 | software/bioinf/fastqc/0.10.1 | 
-| oases | 0.28 | software/bioinf/oases/0.2.8 | 
-| samtools | 0.1.19 | software/bioinf/samtools/0.1.19 | 
-| solexaga | 2.2 | software/bioinf/solexaqa/2.2 | 
-| star | 2.3.0e | software/bioinf/star/2.3.0e | 
-| tophat | 2.0.8b | software/bioinf/tophat/2.0.8b | 
-| velvet | 1.2.09 | software/bioinf/velvet/1.2.09 | 
-| CDO | 1.5.8 | software/cdo/1.5.8 | 
-| HDF5 | 1.8.10 | software/hdf5/1.8.10-parallel | 
-| NCL | 6.1.2 | software/ncl/6.1.2 | 
-| NCO | 4.2.1 | software/nco/4.2.1 | 
-| netCDF | 4.1.3 | software/netcdf/4.1.3 | 
-| netCDF | 4.2-c | software/netcdf/4.2-c | 
-| Parallel netCDF | 1.3.1 | software/netcdf/parallel_1.3.1 | 
-| octave | 3.6.4 | software/octave/gcc/3.6.4 | 
-| orca | 2.9.1 | software/orca/2.9.1 | 
-| Paraview | 3.14.1 | software/paraview/3.14.1 | 
-| udunits | 2.1.24 | software/udunits/gcc/2.1.24 | 
- 
-==== Intel ==== 
- 
-=== Intel Studio 2011 SP1 10 (incl. intelmpi) === 
- 
-^ name ^ version ^ module ^ 
-| udunits | 2.1.24 | software/udunits/intel/2.1.24 | 
  • software.1395917780.txt.gz
  • Last modified: 2014/03/27 11:56
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