start:software:topical:lifesciences:evol_soft:phylogenic_reconstruction

# Phylogenetic Reconstruction

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It is available as a module:

bio/FastTree

http://www.iqtree.org/ Self-claimed “Efficient software for phylogenomic inference”. It is available as a module:

bio/IQ-TREE

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters. It is available as a module:

bio/MrBayes

PhyloBayes is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments. It is available as a module:

bio/PhyloBayes-MPI

RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. It is available as a module:

bio/RAxML

There is no workflow integration, yet. Due to the lack of feedback support is restricted to SaaS. If you like to change that or need further support, please approach us.

• start/software/topical/lifesciences/evol_soft/phylogenic_reconstruction.txt