Assesing Transscript Abundance
Software Options
kallisto
kallisto quantifies abundances of transcripts from RNA-Seq data, or more other target sequences using high-throughput sequencing reads. Modules on Mogon can be found as1):
bio/kallisto
sleuth
sleuth investigates RNA-Seq transcript abundance from kallisto and perform differential expression analysis. Modules on Mogon can be found as:
bio/sleuth
1)
loading a module without version specification will load the most recent one