start:software:topical:lifesciences:ngs:transcript_abundance_tools

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start:software:topical:lifesciences:ngs:transcript_abundance_tools [2020/04/16 15:33]
jrutte02 created
start:software:topical:lifesciences:ngs:transcript_abundance_tools [2021/05/09 22:17] (current)
meesters
Line 15: Line 15:
  
 ''bio/sleuth'' ''bio/sleuth''
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-====== Development with SeqAn3 ====== 
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-===== SeqAn3 ===== 
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-[[https://github.com/seqan/seqan3|SeqAn3]] is C++ library for sequence analysis. It is a follow-up project of SeqAn2 and strives to implement efficient algorithms as a header-only library. 
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-It provides broad functionality, can be used together with OpenMP, even MPI and relatively easy to use((provided you "speak" C++.)). 
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-===== Using the Module ===== 
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-The module for SeqAn3 is located at 
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-''lib/seqan/<version>'' 
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-The older module for SeqAn2((assorted in ''devel'' because it is not only a library)) can still be found at: 
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-''devel/seqan/2.4.0'' 
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-<callout type="info" title="For version 3.0.0 the following aspects apply" icon="true"> 
-  * The API is not stable, yet((Presumably because the new libraries are not yet ships with STL. W.a.W.: Using the library, developing applications will likely need an adaption of include-statements, but little more.)). 
-  * Loading the module will load a recent GCC and CMake.  
-</callout> 
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-If using CMake, be sure to include the following statements((In contrast, the [[http://docs.seqan.de/seqan/3-master-user/setup.html|tutorial]] assumes ''set(SeqAn3_DIR "${CMAKE_SOURCE_DIR}/../seqan3/build_system''.)) 
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-<code cmake> 
-set(SeqAn3_DIR "$ENV{EBROOTSEQAN}/build_system") 
-find_package (SeqAn3 REQUIRED) 
-</code> 
  
  • start/software/topical/lifesciences/ngs/transcript_abundance_tools.txt
  • Last modified: 2021/05/09 22:17
  • by meesters