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--- start:software:topical:lifesciences:ngs:transcript_abundance_tools [2020/04/16 15:33]
jrutte02 created
+++ start:software:topical:lifesciences:ngs:transcript_abundance_tools [2021/05/09 22:17] (current)
meesters
@@ Line 15: / Line 15: @@
 ''bio/sleuth''
-====== Development with SeqAn3 ======
-===== SeqAn3 =====
-[[https://github.com/seqan/seqan3|SeqAn3]] is C++ library for sequence analysis. It is a follow-up project of SeqAn2 and strives to implement efficient algorithms as a header-only library.
-It provides broad functionality, can be used together with OpenMP, even MPI and relatively easy to use((provided you "speak" C++.)).
-===== Using the Module =====
-The module for SeqAn3 is located at
-''lib/seqan/<version>''
-The older module for SeqAn2((assorted in ''devel'' because it is not only a library)) can still be found at:
-''devel/seqan/2.4.0''
-<callout type="info" title="For version 3.0.0 the following aspects apply" icon="true">
-  * The API is not stable, yet((Presumably because the new libraries are not yet ships with STL. W.a.W.: Using the library, developing applications will likely need an adaption of include-statements, but little more.)).
-  * Loading the module will load a recent GCC and CMake.
-</callout>
-If using CMake, be sure to include the following statements((In contrast, the [[http://docs.seqan.de/seqan/3-master-user/setup.html|tutorial]] assumes ''set(SeqAn3_DIR "${CMAKE_SOURCE_DIR}/../seqan3/build_system''.))
-<code cmake>
-set(SeqAn3_DIR "$ENV{EBROOTSEQAN}/build_system")
-find_package (SeqAn3 REQUIRED)
-</code>