Show pageOld revisionsBacklinksBack to top This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong. ====== R and Bioconductor ====== The HPC group supports Bioconductor by providing it in modules: ''bio/R-bundle-Bioconductor'' <WRAP center round info 90%> Please consider the [[development:scripting_languages:r|general notes on R]]. Particularly the notes on //optimization// and //parallelization//. In case you require any assistance, [[hpc@uni-mainz.de|do not hesitate to approach us]]. Any feedback on usage, which can be documented and help others is much appreciated. </WRAP> ===== Installed Libraries ===== The number of installed libraries will vary over time. To see the installed Bioconductor libraries of a particular module, start up R and inquire with: <code Rsplus> library(sessioninfo) library(dplyr) # list all installed packages pkgs <- installed.packages()[,'Package'] ## combine and filter for BioC only bioc_pkgs <- tibble(pkgs, source) %>% filter(source == "Bioconductor") options(tibble.print_max = Inf) bioc_pkgs </code> start/software/topical/lifesciences/r_bio.txt Last modified: 2020/04/16 15:30by jrutte02