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start:working_on_mogon:workflow_organization:setting_up_environment_modules [2021/06/09 15:36]
jrutte02 [Show modules] |
start:working_on_mogon:workflow_organization:setting_up_environment_modules [2021/06/09 15:36] (current)
jrutte02 |
| </code> | </code> |
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| ==== Area Specific Modules ==== | ===== Area Specific Modules ===== |
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| [[https://easybuilders.github.io/easybuild/|EasyBuild]], our software installation framework provides prefixes -- at least the way we install software -- for modulefiles: ''bio'', ''chem'' and ''phys''. This classification is a bit arbitrary at times, but you can search for the respective strings and look whether your desired application is already available. | [[https://easybuilders.github.io/easybuild/|EasyBuild]], our software installation framework provides prefixes -- at least the way we install software -- for modulefiles: ''bio'', ''chem'' and ''phys''. This classification is a bit arbitrary at times, but you can search for the respective strings and look whether your desired application is already available. |
| Other classes include ''lib'' and ''compiler''. Of particular relevance is sometimes the ''lang'' category, e.g. for providing scripting languages with their correct version (see for example the entries on [[:start:development:scripting_languages:python|Python]], [[:start:development:scripting_languages:r_bio|R and BioConductor]] and [[:start:development:scripting_languages:perl|Perl]]). | Other classes include ''lib'' and ''compiler''. Of particular relevance is sometimes the ''lang'' category, e.g. for providing scripting languages with their correct version (see for example the entries on [[:start:development:scripting_languages:python|Python]], [[:start:development:scripting_languages:r_bio|R and BioConductor]] and [[:start:development:scripting_languages:perl|Perl]]). |
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| ==== Loading modules ==== | ===== Loading modules ===== |
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| Now, knowing the modules that are available you can go on by loading the module(s) you need. This will happen using the command ''module load [module]'' or ''module add [module]'' ((They are equal. It's yours to chose which you like more)). | Now, knowing the modules that are available you can go on by loading the module(s) you need. This will happen using the command ''module load [module]'' or ''module add [module]'' ((They are equal. It's yours to chose which you like more)). |
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| ==== Listing active modules ==== | ===== Listing active modules ===== |
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| If you want to check your loaded modules, simply use ''module list''. | If you want to check your loaded modules, simply use ''module list''. |
| </code> | </code> |
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| ==== Unload modules ==== | ===== Unload modules ===== |
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| To expel a specific module you can use the command ''module rm [module]'' or ''module unload [module]''. | To expel a specific module you can use the command ''module rm [module]'' or ''module unload [module]''. |