start:working_on_mogon:workflow_organization:workflow_management_system

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
start:working_on_mogon:workflow_organization:workflow_management_system [2021/02/12 11:54]
meesters [Using MFLOW]
start:working_on_mogon:workflow_organization:workflow_management_system [2021/02/12 11:55] (current)
meesters [Running Workflows]
Line 66: Line 66:
 It may see cumbersome at first - manually editing a configuration file! But it not only serves the purpose of providing and selecting all necessary input. The file also provides a document for you: Which software versions have been used? Which was the selected input exactely?  It may see cumbersome at first - manually editing a configuration file! But it not only serves the purpose of providing and selecting all necessary input. The file also provides a document for you: Which software versions have been used? Which was the selected input exactely? 
 </callout> </callout>
 +
 +====== Testing Workflows and Other Snakemake Instructions ======
 +
 +To pass parameters to ''snakemake'' itself use
 +<code bash>
 +$ mflow ... -- <list of snakemake parameters>
 +</code>
 +
 +A useful application is
 +<code bash>
 +$ mflow ... -- --dry-run
 +</code>
 +
 +to test a given workflow without executing it. Note, that for a dry run some parameters as account, configuration and workflow need be present, too.
 +
  
 ====== Job Output ====== ====== Job Output ======
  • start/working_on_mogon/workflow_organization/workflow_management_system.txt
  • Last modified: 2021/02/12 11:55
  • by meesters