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Ask your administrator if you think this is wrong. <grid> <col xs="12" sm="12" md="5" lg="5"> <jumbotron> ====== MOGON ====== === Welcome to our Wiki === </jumbotron> </col> <col xs="12" sm="12" md="7" lg="7"> <callout color="#c1002a" icon="fa fa-hand-spock-o" title="Quick Start"> - Ask your PI to add your ZDV account to an HPC project <btn type="default" icon="fa fa-link" size="xs">[[start:policies:accounts#how_do_i_get_an_account|more]]</btn>. - Generate yourself an SSH key pair. <btn type="default" icon="fa fa-windows" size="xs">[[start:mogon_cluster:access_from_outside_windows:creating_sshkeys_on_windows#set_up_ssh-keys_for_mogon_using_windows|Windows]]</btn> or <btn type="default" icon="fa fa-linux" size="xs">[[https://mogonwiki.zdv.uni-mainz.de/dokuwiki/start:mogon_cluster:access_from_outside_unix#generating_a_new_ssh-key_using_linux_or_macos|Linux/macOS]]</btn>. - Add your public SSH key in OpenSSH Format to your [[https://account.uni-mainz.de/my-account|ZDV Account]] <btn type="default" icon="fa fa-link" size="xs">[[start:mogon_cluster:basic_authentication#add_ssh-key_to_mogon|more]]</btn>. - Prepare your Smartphone for 2FA by installing the **freeOTP** or **PrivacyIDEA** app <btn type="default" icon="fa fa-link" size="xs">[[start:mogon_cluster:basic_authentication#prepare_your_smartphone_for_2fa|more]]</btn>. - Contact the HPC-Group via [[hpc@uni-mainz.de?subject=MOGON Authentication|hpc@uni-mainz.de]] with your **ZDV Account** - Complete the PrivacyIdea process with an HPC-Admin </callout> </col> </grid> ~~CLEARFIX~~ <grid> <col xs="12" sm="6" md="4" lg="3"> <panel type="default" title="MOGON-Cluster"> <nav type="pills" stacked="true"> * [[:start:mogon_cluster:access|Accessing MOGON]] * [[:start:mogon_cluster:basic_authentication|Basic Authentication]] * [[:start:mogon_cluster:access_from_outside_windows|Access MOGON using Windows]] * [[:start:mogon_cluster:access_from_outside_unix|Access MOGON using Linux/macOS]] * [[:start:mogon_cluster:nodes|Hardware and Architecture]] </nav> </panel> <panel type="default" title="Help and Service"> <nav type="pills" stacked="true"> * [[:start:training_and_outreach:courses|Courses]] * [[:start:training_and_outreach:workshop|HPC Workshop]] * [[:start:training_and_outreach:ticket_system|Getting Support]] * [[:start:training_and_outreach:faq|FAQ]] </nav> </panel> <panel type="default" title="Policies"> <nav type="pills" stacked="true"> * [[:start:policies:loginnodes|Login-Nodes]] * [[:start:policies:home_directory|Home directory]] * [[:start:policies:accounts|Accounts & Accounting]] * [[:start:policies:thidpartycourses|MOGON Courses]] * [[:start:policies:software_installation|Software request]] * [[:start:policies:data_management|Data Management]] </nav> </panel> </col> <col xs="12" sm="6" md="4" lg="3"> <panel type="default" title="Working on MOGON"> <panel-body> <nav type="pills" stacked="true"> * [[:start:working_on_mogon:slurm_submit|Submit Jobs to MOGON]] * [[:start:working_on_mogon:partitions|Partitions / Batch Queues]] * [[:start:working_on_mogon:slurm_manage|Manage and Monitor Jobs]] * [[:start:working_on_mogon:memory_reservation|Memory Reservation]] * Managing I/O Issues * [[:start:working_on_mogon:io_odds_and_ends:slurm_localscratch|Node Local Scratch]] * [[:start:working_on_mogon:io_odds_and_ends:ramdisk|Ramdisk Reservation]] * [[:start:working_on_mogon:io_odds_and_ends:special_fs|Special File Systems]] * Workflow Organization * [[:start:working_on_mogon:workflow_organization:job_dependeny|Job Dependency]] * [[:start:working_on_mogon:workflow_organization:job_arrays|Job Arrays]] * [[:start:working_on_mogon:workflow_organization:node_local_scheduling|Script Based Parallelization]] * [[:start:working_on_mogon:workflow_organization:workflow_management_system|Snakemake Workflow Manager]] * [[:start:working_on_mogon:workflow_organization:checkpoint_restart|Checkpoint Restarting]] * [[:start:working_on_mogon:gpu|Using GPU Nodes]] * [[:start:working_on_mogon:evaluation|Evaluating Jobs]] </nav> </panel-body> </panel> <panel type="default" title="Filesystems"> <nav type="pills" stacked="true"> * [[:start:fs_dm:filesystems:overview|Filesystems Overview]] * [[:start:fs_dm:filesystems:transfer|Data Transfer Options]] * [[:start:fs_dm:filesystems:quotas|Quotas]] * [[:start:fs_dm:filesystems:backup|Backup]] * [[:start:fs_dm:filesystems:access_fs_windows|Access w/ Windows]] * [[:start:fs_dm:filesystems:access_fs_mac|Access w/ Mac]] * [[:start:fs_dm:filesystems:access_fs_linux|Access w/ Linux]] </nav> </panel> </col> <col xs="12" sm="6" md="4" lg="3"> <panel type="default" title="Data Management"> <nav type="pills" stacked="true"> * [[:start:fs_dm:download|Downloading Scientific Data]] * [[:start:fs_dm:archiving:preparation|Preparation Steps]] * [[:start:fs_dm:archiving:irods|Data Management with iRODS]] </nav> </panel> <panel type="default" title="Software"> === General === <nav type="pills" stacked="true"> * [[:start:software:software_usage|How you can use Software on MOGON]] * [[:start:software:installation_remarks|How we build and how you can use Software]] </nav> === Containers === <nav type="pills" stacked="true"> * [[:start:software:containers:singularity|Singularity]] </nav> === Topical === <nav type="pills" stacked="true"> * LifeSciences * [[:start:software:topical:lifesciences:r_bio|R and BioConductor]] * [[:start:software:topical:lifesciences:ngs|NGS & Co.]] * [[:start:software:topical:lifesciences:evol_soft|Evolutionary & Phylogenetics Software Tools]] * [[:start:software:topical:lifesciences:molecular_docking|Molecular Docking Tools]] * [[:start:software:topical:lifesciences:molecular_dynamics|Molecular Dynamics Simulations]] * [[:start:software:topical:lifesciences:single_particle_analysis|Single Particle Processing / Analysis]] * Physical and Chemical Simulation Software * [[:start:software:topical:physics:cp2k|CP2K]] * [[:start:software:topical:lifesciences:molecular_dynamics|VMD and NAMD]] * [[:start:software:topical:physics:orca|ORCA]] * [[:start:software:topical:physics:eulag|Simulations using EULAG]] * [[start:software:topical:physics:hoomd-plugins|Installation of HOOMD-plugins]] * [[https://gaussian.com|Gaussian]] * [[https://www.plumed.org/|PLUMED]] * [[https://sunqm.github.io/pyscf/|PySCF]] * [[http://www.espresso-pp.de/|ESPResSo++]] </nav> === Visualization === <nav type="pills" stacked="true"> * [[:start:software:visualization:paraview|Paraview]] </nav> </panel> </col> <col xs="12" sm="6" md="4" lg="3"> <panel type="default" title="Development"> <nav type="pills" stacked="true"> * Data Science * [[:start:development:datascience:spark3|Spark 3]] * Scripting Languages * [[:start:development:scripting_languages:java|Java]] * [[:start:development:scripting_languages:matlab|Matlab]] * [[:start:development:scripting_languages:mathematica|Mathematica]] * [[:start:development:scripting_languages:julia|Julia]] * [[:start:development:scripting_languages:perl|Perl]] * [[:start:development:scripting_languages:python|Python]] * [[:start:development:scripting_languages:r_bio|R]] * [[:start:development:scripting_languages:shells|Shells]] * [[:start:development:ides_and_editors|Editors, IDEs and Notebooks]] * [[:start:development:monitoring|Monitoring]] * [[:start:development:source_code_management|Source Code Management]] * Parallelization Libraries * [[:start:development:parallelization:parallel_io|Parallel File I/O]] * [[:start:development:parallelization:mpi|MPI]] * [[:start:development:analysis_and_optimization|Performance Optimization Tools]] * [[:start:development:debugging|Debugging Tools]] </nav> </panel> </col> </grid> start.txt Last modified: 2022/03/01 13:13by jrutte02